org.jmol.viewer

Class StateCreator

java.lang.Object

org.jmol.viewer.JmolStateCreator

org.jmol.viewer.StateCreator

public class StateCreator
extends JmolStateCreator

StateCreator handles all aspects of working with the "state" as generally defined, including -- creating the state script -- general output, including logging -- handling undo/redo -- processing SYNC directives Called by reflection only; all state generation script here, for modularization in JavaScript

Field Summary

Fields

Modifier and Type	Field and Description
private static int	MAX_ACTION_UNDO
(package private) static String	SIMULATION_PROTOCOL
private Map<String,BS>	temp
private Map<String,BS>	temp2
private Map<String,BS>	temp3
private boolean	undoWorking
private Viewer	viewer

Constructor Summary

Constructors

Constructor and Description
StateCreator()

Method Summary

Modifier and Type	Method and Description
private static void	addBs(javajs.util.SB sb, String key, BS bs)
private static void	addTickInfo(javajs.util.SB sb, TickInfo tickInfo, boolean addFirst)
private static void	appendCmd(javajs.util.SB s, String cmd)
private void	appendLoadStates(javajs.util.SB cmds)
private void	appendTickInfo(String myType, javajs.util.SB sb, TickInfo t)
private static String	chop(String s)
private void	clearTemp()
(package private) String	getAllSettings(String prefix)
private Map<String,Object>	getAnimationInfo(AnimationManager am)
private String	getAnimState(AnimationManager am, javajs.util.SB sfunc)
(package private) String	getAtomDefs(Map<String,Object> names)
(package private) String	getAtomicPropertyState(byte taintWhat, BS bsSelected)
(package private) void	getAtomicPropertyStateBuffer(javajs.util.SB commands, byte type, BS bs, String label, float[] fData)
(package private) String	getAtomShapeSetState(Shape shape, AtomShape[] bioShapes)
(package private) String	getAtomShapeState(AtomShape shape)
(package private) String	getBondState(Shape shape, BS bsOrderSet, boolean reportAll)
private int	getCEState(ColorEncoder p, javajs.util.SB s)
private String	getColorState(ColorManager cm, javajs.util.SB sfunc)
(package private) String	getCommands(Map<String,BS> htDefine, Map<String,BS> htMore, String selectCmd)
private static String	getCommands2(Map<String,BS> ht, javajs.util.SB s, String setPrev, String selectCmd)
private String	getDataState(javajs.util.SB sfunc)
private String	getDefaultLabelState(Labels l)
private String	getDefinedState(javajs.util.SB sfunc, boolean isAll)
private String	getFileState(javajs.util.SB sfunc)
(package private) String	getFontLineShapeState(String s, String myType, TickInfo[] tickInfos)
(package private) String	getFontState(String myType, javajs.awt.Font font3d)
(package private) String	getFunctionCalls(String selectedFunction)
(package private) Map<String,Object>	getInfo(Object manager)
void	getInlineData(javajs.util.SB loadScript, String strModel, boolean isAppend, String loadFilter)
(package private) String	getLoadState(Map<String,Object> htParams) these settings are determined when the file is loaded and are kept even though they might later change.
(package private) String	getMeasurementState(Measures shape, javajs.util.List<Measurement> mList, int measurementCount, javajs.awt.Font font3d, TickInfo ti)
(package private) String	getModelState(javajs.util.SB sfunc, boolean isAll, boolean withProteinStructure)
private String	getSelectionState(SelectionManager sm, javajs.util.SB sfunc)
(package private) void	getShapeSetState(AtomShape as, Shape shape, int monomerCount, Group[] monomers, BS bsSizeDefault, Map<String,BS> temp, Map<String,BS> temp2)
private void	getShapeState(javajs.util.SB commands, boolean isAll, int iShape)
(package private) String	getShapeState(Shape shape)
(package private) String	getSpecularState()
(package private) String	getSpinState(boolean isAll)
(package private) String	getStateScript(String type, int width, int height)
private String	getTextState(Text t)
(package private) String	getTrajectoryState()
private String	getVariableState(GlobalSettings global, javajs.util.SB sfunc)
private String	getViewState(TransformManager tm, javajs.util.SB sfunc)
private String	getWindowState(javajs.util.SB sfunc, int width, int height)
private static boolean	isTainted(BS[] tainted, int atomIndex, byte type)
(package private) void	mouseScript(String script)
(package private) void	setViewer(Viewer viewer)
(package private) void	syncScript(String script, String applet, int port)
(package private) void	undoMoveAction(int action, int n)
(package private) void	undoMoveActionClear(int taintedAtom, int type, boolean clearRedo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

viewer

private Viewer viewer

SIMULATION_PROTOCOL

static String SIMULATION_PROTOCOL

temp

private Map<String,BS> temp

temp2

private Map<String,BS> temp2

temp3

private Map<String,BS> temp3

undoWorking

private boolean undoWorking

MAX_ACTION_UNDO

private static final int MAX_ACTION_UNDO

See Also:

Constant Field Values

Constructor Detail

StateCreator

public StateCreator()

Method Detail

setViewer

void setViewer(Viewer viewer)

Specified by:

setViewer in class JmolStateCreator

getStateScript

String getStateScript(String type,
                      int width,
                      int height)

Specified by:

getStateScript in class JmolStateCreator

getDataState

private String getDataState(javajs.util.SB sfunc)

getDefinedState

private String getDefinedState(javajs.util.SB sfunc,
                               boolean isAll)

getModelState

String getModelState(javajs.util.SB sfunc,
                     boolean isAll,
                     boolean withProteinStructure)

Specified by:

getModelState in class JmolStateCreator

getShapeState

private void getShapeState(javajs.util.SB commands,
                           boolean isAll,
                           int iShape)

getWindowState

private String getWindowState(javajs.util.SB sfunc,
                              int width,
                              int height)

getSpecularState

String getSpecularState()

Specified by:

getSpecularState in class JmolStateCreator

getFileState

private String getFileState(javajs.util.SB sfunc)

appendLoadStates

private void appendLoadStates(javajs.util.SB cmds)

getInlineData

public void getInlineData(javajs.util.SB loadScript,
                          String strModel,
                          boolean isAppend,
                          String loadFilter)

Specified by:

getInlineData in class JmolStateCreator

getColorState

private String getColorState(ColorManager cm,
                             javajs.util.SB sfunc)

getCEState

private int getCEState(ColorEncoder p,
                       javajs.util.SB s)

getAnimState

private String getAnimState(AnimationManager am,
                            javajs.util.SB sfunc)

getVariableState

private String getVariableState(GlobalSettings global,
                                javajs.util.SB sfunc)

getDefaultLabelState

private String getDefaultLabelState(Labels l)

getSelectionState

private String getSelectionState(SelectionManager sm,
                                 javajs.util.SB sfunc)

getTrajectoryState

String getTrajectoryState()

Specified by:

getTrajectoryState in class JmolStateCreator

getViewState

private String getViewState(TransformManager tm,
                            javajs.util.SB sfunc)

getSpinState

String getSpinState(boolean isAll)

Specified by:

getSpinState in class JmolStateCreator

Parameters:

isAll -

Returns:

spin state

getInfo

Map<String,Object> getInfo(Object manager)

Specified by:

getInfo in class JmolStateCreator

getAnimationInfo

private Map<String,Object> getAnimationInfo(AnimationManager am)

getCommands

String getCommands(Map<String,BS> htDefine,
                   Map<String,BS> htMore,
                   String selectCmd)

Specified by:

getCommands in class JmolStateCreator

getCommands2

private static String getCommands2(Map<String,BS> ht,
                                   javajs.util.SB s,
                                   String setPrev,
                                   String selectCmd)

appendCmd

private static void appendCmd(javajs.util.SB s,
                              String cmd)

addBs

private static void addBs(javajs.util.SB sb,
                          String key,
                          BS bs)

getFontState

String getFontState(String myType,
                    javajs.awt.Font font3d)

Specified by:

getFontState in class JmolStateCreator

getFontLineShapeState

String getFontLineShapeState(String s,
                             String myType,
                             TickInfo[] tickInfos)

Specified by:

getFontLineShapeState in class JmolStateCreator

appendTickInfo

private void appendTickInfo(String myType,
                            javajs.util.SB sb,
                            TickInfo t)

addTickInfo

private static void addTickInfo(javajs.util.SB sb,
                                TickInfo tickInfo,
                                boolean addFirst)

getShapeSetState

void getShapeSetState(AtomShape as,
                      Shape shape,
                      int monomerCount,
                      Group[] monomers,
                      BS bsSizeDefault,
                      Map<String,BS> temp,
                      Map<String,BS> temp2)

Specified by:

getShapeSetState in class JmolStateCreator

getMeasurementState

String getMeasurementState(Measures shape,
                           javajs.util.List<Measurement> mList,
                           int measurementCount,
                           javajs.awt.Font font3d,
                           TickInfo ti)

Specified by:

getMeasurementState in class JmolStateCreator

getBondState

String getBondState(Shape shape,
                    BS bsOrderSet,
                    boolean reportAll)

Specified by:

getBondState in class JmolStateCreator

clearTemp

private void clearTemp()

getAtomShapeSetState

String getAtomShapeSetState(Shape shape,
                            AtomShape[] bioShapes)

Specified by:

getAtomShapeSetState in class JmolStateCreator

getShapeState

String getShapeState(Shape shape)

Specified by:

getShapeState in class JmolStateCreator

getTextState

private String getTextState(Text t)

getLoadState

String getLoadState(Map<String,Object> htParams)

these settings are determined when the file is loaded and are kept even though they might later change. So we list them here and ALSO let them be defined in the settings. 10.9.98 missed this.

Specified by:

getLoadState in class JmolStateCreator

Parameters:

htParams -

Returns:

script command

getAllSettings

String getAllSettings(String prefix)

Specified by:

getAllSettings in class JmolStateCreator

chop

private static String chop(String s)

getAtomShapeState

String getAtomShapeState(AtomShape shape)

Specified by:

getAtomShapeState in class JmolStateCreator

getFunctionCalls

String getFunctionCalls(String selectedFunction)

Specified by:

getFunctionCalls in class JmolStateCreator

isTainted

private static boolean isTainted(BS[] tainted,
                                 int atomIndex,
                                 byte type)

getAtomicPropertyState

String getAtomicPropertyState(byte taintWhat,
                              BS bsSelected)

Specified by:

getAtomicPropertyState in class JmolStateCreator

getAtomicPropertyStateBuffer

void getAtomicPropertyStateBuffer(javajs.util.SB commands,
                                  byte type,
                                  BS bs,
                                  String label,
                                  float[] fData)

Specified by:

getAtomicPropertyStateBuffer in class JmolStateCreator

getAtomDefs

String getAtomDefs(Map<String,Object> names)

Specified by:

getAtomDefs in class JmolStateCreator

undoMoveAction

void undoMoveAction(int action,
                    int n)

Specified by:

undoMoveAction in class JmolStateCreator

undoMoveActionClear

void undoMoveActionClear(int taintedAtom,
                         int type,
                         boolean clearRedo)

Specified by:

undoMoveActionClear in class JmolStateCreator

syncScript

void syncScript(String script,
                String applet,
                int port)

Specified by:

syncScript in class JmolStateCreator

mouseScript

void mouseScript(String script)

Specified by:

mouseScript in class JmolStateCreator