PropertyManager

java.lang.Object
- org.jmol.viewer.PropertyManager

All Implemented Interfaces:

JmolPropertyManager
```
public class PropertyManager
extends Object
implements JmolPropertyManager
```
The PropertyManager handles all operations relating to delivery of properties with the getProperty() method, or its specifically cast forms getPropertyString() or getPropertyJSON(). It is instantiated by reflection

Field Summary

Fields
Modifier and Type	Field and Description
`private static String`	`atomExpression`
`private Map<String,Integer>`	`map`
`private static int`	`PROP_ANIMATION_INFO`
`private static int`	`PROP_APPLET_INFO`
`private static int`	`PROP_ATOM_INFO`
`private static int`	`PROP_ATOM_LIST`
`private static int`	`PROP_AUXILIARY_INFO`
`private static int`	`PROP_BOND_INFO`
`private static int`	`PROP_BOUNDBOX_INFO`
`private static int`	`PROP_CENTER_INFO`
`private static int`	`PROP_CHAIN_INFO`
`private static int`	`PROP_CONSOLE_TEXT`
`private static int`	`PROP_COUNT`
`private static int`	`PROP_DATA_INFO`
`private static int`	`PROP_ERROR_MESSAGE`
`private static int`	`PROP_EVALUATE`
`private static int`	`PROP_EXTRACT_MODEL`
`private static int`	`PROP_FILE_INFO`
`private static int`	`PROP_FILECONTENTS`
`private static int`	`PROP_FILECONTENTS_PATH`
`private static int`	`PROP_FILEHEADER`
`private static int`	`PROP_FILENAME`
`private static int`	`PROP_IMAGE`
`private static int`	`PROP_ISOSURFACE_DATA`
`private static int`	`PROP_ISOSURFACE_INFO`
`private static int`	`PROP_JMOL_STATUS`
`private static int`	`PROP_JMOL_VIEWER`
`private static int`	`PROP_JSPECVIEW`
`private static int`	`PROP_LIGAND_INFO`
`private static int`	`PROP_MEASUREMENT_INFO`
`private static int`	`PROP_MENU`
`private static int`	`PROP_MESSAGE_QUEUE`
`private static int`	`PROP_MINIMIZATION_INFO`
`private static int`	`PROP_MODEL_INFO`
`private static int`	`PROP_MOLECULE_INFO`
`private static int`	`PROP_MOUSE_INFO`
`private static int`	`PROP_NMR_INFO`
`private static int`	`PROP_ORIENTATION_INFO`
`private static int`	`PROP_POINTGROUP_INFO`
`private static int`	`PROP_POLYMER_INFO`
`private static int`	`PROP_SCRIPT_QUEUE_INFO`
`private static int`	`PROP_SHAPE_INFO`
`private static int`	`PROP_STATE_INFO`
`private static int`	`PROP_TRANSFORM_INFO`
`private static int`	`PROP_VAR_INFO`
`private static String[]`	`propertyTypes`
`private static String[]`	`readableTypes`
`(package private) Viewer`	`viewer`

Constructor Summary

Constructors
Constructor and Description

PropertyManager()

Constructors
Constructor and Description
`PropertyManager()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`private boolean`	`addMolFile(javajs.util.SB mol, BS bsAtoms, BS bsBonds, boolean asV3000, boolean asJSON, Quaternion q)`
`boolean`	`checkPropertyParameter(String name)`
`Object`	`extractProperty(Object property, SV[] args, int ptr)`
`javajs.util.List<Map<String,Object>>`	`getAllAtomInfo(BS bs)`
`javajs.util.List<Map<String,Object>>`	`getAllBondInfo(Object bsOrArray)`
`Map<String,javajs.util.List<Map<String,Object>>>`	`getAllChainInfo(BS bs)`
`Map<String,javajs.util.List<Map<String,Object>>>`	`getAllPolymerInfo(BS bs)`
`private Map<String,Object>`	`getAtomInfoLong(int i)`
`private void`	`getAtomRecordMOL(ModelSet ms, javajs.util.SB mol, int n, Atom a, Quaternion q, javajs.util.P3 pTemp, javajs.util.P3 ptTemp, boolean asV3000, boolean asJSON)`
`private static void`	`getAtomResidueInfo(javajs.util.SB info, Atom atom)`
`private String`	`getBasePairInfo(BS bs)`
`private Map<String,Object>`	`getBondInfo(int i)`
`private void`	`getBondRecordMOL(javajs.util.SB mol, int n, Bond b, int[] atomMap, boolean asV3000, boolean asJSON)`
`private javajs.util.List<Map<String,javajs.util.List<Map<String,Object>>>>`	`getChainInfo(int modelIndex, BS bs)`
`String`	`getChimeInfo(int tok, BS bs)`
`private String`	`getChimeInfoA(Atom[] atoms, int tok, BS bs)`
`private static BS`	`getCovalentBondsForAtoms(Bond[] bonds, int bondCount, BS bsAtoms)`
`String`	`getDefaultPropertyParam(int propID)`
`(package private) static Object`	`getFileInfo(Object objHeader, String type)`
`Map<String,Object>`	`getLigandInfo(Object atomExpression)`
`String`	`getModelExtract(BS bs, boolean doTransform, boolean isModelKit, String type)`
`String`	`getModelFileInfo(BS frames)`
`Map<String,Object>`	`getModelInfo(Object atomExpression)`
`private Object`	`getModelProperty(String propertyName, Object propertyValue)`
`javajs.util.List<Map<String,Object>>`	`getMoleculeInfo(Object atomExpression)`
`private static String`	`getParamType(int propID)`
`Object`	`getProperty(String returnType, String infoType, Object paramInfo)`
`private Object`	`getPropertyAsObject(String infoType, Object paramInfo, String returnType)`
`private static String`	`getPropertyName(int propID)`
`int`	`getPropertyNumber(String infoType)`
`Object`	`getSymmetryInfo(BS bsAtoms, String xyz, int op, javajs.util.P3 pt, javajs.util.P3 pt2, String id, int type)`
`private Object`	`getVariables(String name)`
`private static boolean`	`isReadableAsString(String infoType)`
`void`	`setViewer(Viewer viewer)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- viewer
```
Viewer viewer
```
- map
```
private Map<String,Integer> map
```
- atomExpression
```
private static final String atomExpression
```
  See Also:
  
  Constant Field Values
- propertyTypes
```
private static final String[] propertyTypes
```
- PROP_APPLET_INFO
```
private static final int PROP_APPLET_INFO
```
  See Also:
  
  Constant Field Values
- PROP_FILENAME
```
private static final int PROP_FILENAME
```
  See Also:
  
  Constant Field Values
- PROP_FILEHEADER
```
private static final int PROP_FILEHEADER
```
  See Also:
  
  Constant Field Values
- PROP_FILECONTENTS_PATH
```
private static final int PROP_FILECONTENTS_PATH
```
  See Also:
  
  Constant Field Values
- PROP_FILECONTENTS
```
private static final int PROP_FILECONTENTS
```
  See Also:
  
  Constant Field Values
- PROP_ANIMATION_INFO
```
private static final int PROP_ANIMATION_INFO
```
  See Also:
  
  Constant Field Values
- PROP_MODEL_INFO
```
private static final int PROP_MODEL_INFO
```
  See Also:
  
  Constant Field Values
- PROP_LIGAND_INFO
```
private static final int PROP_LIGAND_INFO
```
  See Also:
  
  Constant Field Values
- PROP_SHAPE_INFO
```
private static final int PROP_SHAPE_INFO
```
  See Also:
  
  Constant Field Values
- PROP_MEASUREMENT_INFO
```
private static final int PROP_MEASUREMENT_INFO
```
  See Also:
  
  Constant Field Values
- PROP_CENTER_INFO
```
private static final int PROP_CENTER_INFO
```
  See Also:
  
  Constant Field Values
- PROP_ORIENTATION_INFO
```
private static final int PROP_ORIENTATION_INFO
```
  See Also:
  
  Constant Field Values
- PROP_TRANSFORM_INFO
```
private static final int PROP_TRANSFORM_INFO
```
  See Also:
  
  Constant Field Values
- PROP_ATOM_LIST
```
private static final int PROP_ATOM_LIST
```
  See Also:
  
  Constant Field Values
- PROP_ATOM_INFO
```
private static final int PROP_ATOM_INFO
```
  See Also:
  
  Constant Field Values
- PROP_BOND_INFO
```
private static final int PROP_BOND_INFO
```
  See Also:
  
  Constant Field Values
- PROP_CHAIN_INFO
```
private static final int PROP_CHAIN_INFO
```
  See Also:
  
  Constant Field Values
- PROP_POLYMER_INFO
```
private static final int PROP_POLYMER_INFO
```
  See Also:
  
  Constant Field Values
- PROP_MOLECULE_INFO
```
private static final int PROP_MOLECULE_INFO
```
  See Also:
  
  Constant Field Values
- PROP_STATE_INFO
```
private static final int PROP_STATE_INFO
```
  See Also:
  
  Constant Field Values
- PROP_EXTRACT_MODEL
```
private static final int PROP_EXTRACT_MODEL
```
  See Also:
  
  Constant Field Values
- PROP_JMOL_STATUS
```
private static final int PROP_JMOL_STATUS
```
  See Also:
  
  Constant Field Values
- PROP_JMOL_VIEWER
```
private static final int PROP_JMOL_VIEWER
```
  See Also:
  
  Constant Field Values
- PROP_MESSAGE_QUEUE
```
private static final int PROP_MESSAGE_QUEUE
```
  See Also:
  
  Constant Field Values
- PROP_AUXILIARY_INFO
```
private static final int PROP_AUXILIARY_INFO
```
  See Also:
  
  Constant Field Values
- PROP_BOUNDBOX_INFO
```
private static final int PROP_BOUNDBOX_INFO
```
  See Also:
  
  Constant Field Values
- PROP_DATA_INFO
```
private static final int PROP_DATA_INFO
```
  See Also:
  
  Constant Field Values
- PROP_IMAGE
```
private static final int PROP_IMAGE
```
  See Also:
  
  Constant Field Values
- PROP_EVALUATE
```
private static final int PROP_EVALUATE
```
  See Also:
  
  Constant Field Values
- PROP_MENU
```
private static final int PROP_MENU
```
  See Also:
  
  Constant Field Values
- PROP_MINIMIZATION_INFO
```
private static final int PROP_MINIMIZATION_INFO
```
  See Also:
  
  Constant Field Values
- PROP_POINTGROUP_INFO
```
private static final int PROP_POINTGROUP_INFO
```
  See Also:
  
  Constant Field Values
- PROP_FILE_INFO
```
private static final int PROP_FILE_INFO
```
  See Also:
  
  Constant Field Values
- PROP_ERROR_MESSAGE
```
private static final int PROP_ERROR_MESSAGE
```
  See Also:
  
  Constant Field Values
- PROP_MOUSE_INFO
```
private static final int PROP_MOUSE_INFO
```
  See Also:
  
  Constant Field Values
- PROP_ISOSURFACE_INFO
```
private static final int PROP_ISOSURFACE_INFO
```
  See Also:
  
  Constant Field Values
- PROP_ISOSURFACE_DATA
```
private static final int PROP_ISOSURFACE_DATA
```
  See Also:
  
  Constant Field Values
- PROP_CONSOLE_TEXT
```
private static final int PROP_CONSOLE_TEXT
```
  See Also:
  
  Constant Field Values
- PROP_JSPECVIEW
```
private static final int PROP_JSPECVIEW
```
  See Also:
  
  Constant Field Values
- PROP_SCRIPT_QUEUE_INFO
```
private static final int PROP_SCRIPT_QUEUE_INFO
```
  See Also:
  
  Constant Field Values
- PROP_NMR_INFO
```
private static final int PROP_NMR_INFO
```
  See Also:
  
  Constant Field Values
- PROP_VAR_INFO
```
private static final int PROP_VAR_INFO
```
  See Also:
  
  Constant Field Values
- PROP_COUNT
```
private static final int PROP_COUNT
```
  See Also:
  
  Constant Field Values
- readableTypes
```
private static final String[] readableTypes
```

Constructor Detail
- PropertyManager
```
public PropertyManager()
```

Method Detail

setViewer
```
public void setViewer(Viewer viewer)
```
Specified by:

setViewer in interface JmolPropertyManager

getPropertyNumber
```
public int getPropertyNumber(String infoType)
```
Specified by:

getPropertyNumber in interface JmolPropertyManager

getDefaultPropertyParam
```
public String getDefaultPropertyParam(int propID)
```
Specified by:

getDefaultPropertyParam in interface JmolPropertyManager

checkPropertyParameter
```
public boolean checkPropertyParameter(String name)
```
Specified by:

checkPropertyParameter in interface JmolPropertyManager

getProperty

public Object getProperty(String returnType,
                          String infoType,
                          Object paramInfo)

Specified by:: getProperty in interface JmolPropertyManager

getModelProperty

private Object getModelProperty(String propertyName,
                                Object propertyValue)

extractProperty

public Object extractProperty(Object property,
                              SV[] args,
                              int ptr)

Specified by:: extractProperty in interface JmolPropertyManager

getPropertyName

private static String getPropertyName(int propID)

getParamType

private static String getParamType(int propID)

isReadableAsString

private static boolean isReadableAsString(String infoType)

getPropertyAsObject

private Object getPropertyAsObject(String infoType,
                                   Object paramInfo,
                                   String returnType)

getVariables

private Object getVariables(String name)

getFileInfo

static Object getFileInfo(Object objHeader,
                          String type)

getMoleculeInfo

public javajs.util.List<Map<String,Object>> getMoleculeInfo(Object atomExpression)

getModelInfo

public Map<String,Object> getModelInfo(Object atomExpression)

Specified by:: getModelInfo in interface JmolPropertyManager

getLigandInfo
```
public Map<String,Object> getLigandInfo(Object atomExpression)
```
Specified by:

getLigandInfo in interface JmolPropertyManager

getSymmetryInfo

public Object getSymmetryInfo(BS bsAtoms,
                              String xyz,
                              int op,
                              javajs.util.P3 pt,
                              javajs.util.P3 pt2,
                              String id,
                              int type)

Specified by:: getSymmetryInfo in interface JmolPropertyManager

getModelExtract

public String getModelExtract(BS bs,
                              boolean doTransform,
                              boolean isModelKit,
                              String type)

Specified by:: getModelExtract in interface JmolPropertyManager

addMolFile

private boolean addMolFile(javajs.util.SB mol,
                           BS bsAtoms,
                           BS bsBonds,
                           boolean asV3000,
                           boolean asJSON,
                           Quaternion q)

getCovalentBondsForAtoms

private static BS getCovalentBondsForAtoms(Bond[] bonds,
                                           int bondCount,
                                           BS bsAtoms)

getAtomRecordMOL

private void getAtomRecordMOL(ModelSet ms,
                              javajs.util.SB mol,
                              int n,
                              Atom a,
                              Quaternion q,
                              javajs.util.P3 pTemp,
                              javajs.util.P3 ptTemp,
                              boolean asV3000,
                              boolean asJSON)

getBondRecordMOL

private void getBondRecordMOL(javajs.util.SB mol,
                              int n,
                              Bond b,
                              int[] atomMap,
                              boolean asV3000,
                              boolean asJSON)

getChimeInfo

public String getChimeInfo(int tok,
                           BS bs)

Specified by:: getChimeInfo in interface JmolPropertyManager

getChimeInfoA

private String getChimeInfoA(Atom[] atoms,
                             int tok,
                             BS bs)

getModelFileInfo
```
public String getModelFileInfo(BS frames)
```
Specified by:

getModelFileInfo in interface JmolPropertyManager

getAllAtomInfo

public javajs.util.List<Map<String,Object>> getAllAtomInfo(BS bs)

getAtomInfoLong

private Map<String,Object> getAtomInfoLong(int i)

getAllBondInfo

public javajs.util.List<Map<String,Object>> getAllBondInfo(Object bsOrArray)

getBondInfo

private Map<String,Object> getBondInfo(int i)

getAllChainInfo

public Map<String,javajs.util.List<Map<String,Object>>> getAllChainInfo(BS bs)

getChainInfo

private javajs.util.List<Map<String,javajs.util.List<Map<String,Object>>>> getChainInfo(int modelIndex,
                                                                                        BS bs)

getAllPolymerInfo

public Map<String,javajs.util.List<Map<String,Object>>> getAllPolymerInfo(BS bs)

getBasePairInfo

private String getBasePairInfo(BS bs)

getAtomResidueInfo

private static void getAtomResidueInfo(javajs.util.SB info,
                                       Atom atom)

Class PropertyManager

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

viewer

map

atomExpression

propertyTypes

PROP_APPLET_INFO

PROP_FILENAME

PROP_FILEHEADER

PROP_FILECONTENTS_PATH

PROP_FILECONTENTS

PROP_ANIMATION_INFO

PROP_MODEL_INFO

PROP_LIGAND_INFO

PROP_SHAPE_INFO

PROP_MEASUREMENT_INFO

PROP_CENTER_INFO

PROP_ORIENTATION_INFO

PROP_TRANSFORM_INFO

PROP_ATOM_LIST

PROP_ATOM_INFO

PROP_BOND_INFO

PROP_CHAIN_INFO

PROP_POLYMER_INFO

PROP_MOLECULE_INFO

PROP_STATE_INFO

PROP_EXTRACT_MODEL

PROP_JMOL_STATUS

PROP_JMOL_VIEWER

PROP_MESSAGE_QUEUE

PROP_AUXILIARY_INFO

PROP_BOUNDBOX_INFO

PROP_DATA_INFO

PROP_IMAGE

PROP_EVALUATE

PROP_MENU

PROP_MINIMIZATION_INFO

PROP_POINTGROUP_INFO

PROP_FILE_INFO

PROP_ERROR_MESSAGE

PROP_MOUSE_INFO

PROP_ISOSURFACE_INFO

PROP_ISOSURFACE_DATA

PROP_CONSOLE_TEXT

PROP_JSPECVIEW

PROP_SCRIPT_QUEUE_INFO

PROP_NMR_INFO

PROP_VAR_INFO

PROP_COUNT

readableTypes

Constructor Detail

PropertyManager

Method Detail

setViewer

getPropertyNumber

getDefaultPropertyParam

checkPropertyParameter

getProperty

getModelProperty

extractProperty

getPropertyName

getParamType

isReadableAsString

getPropertyAsObject

getVariables

getFileInfo

getMoleculeInfo

getModelInfo

getLigandInfo

getSymmetryInfo

getModelExtract

addMolFile

getCovalentBondsForAtoms

getAtomRecordMOL

getBondRecordMOL

getChimeInfo