org.jmol.shapespecial

Class Ellipsoids

java.lang.Object

org.jmol.shape.Shape

org.jmol.shapespecial.Ellipsoids

public class Ellipsoids
extends Shape

Field Summary

Fields

Modifier and Type	Field and Description
Map<Tensor,Ellipsoid>	atomEllipsoids
private Ellipsoid	ellipsoidSelected
private BS	selectedAtoms
Map<String,Ellipsoid>	simpleEllipsoids
private String	typeSelected

Fields inherited from class org.jmol.shape.Shape

bsColixSet, bsSizeSet, gdata, isBioShape, modelSet, myVisibilityFlag, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, viewer

Constructor Summary

Constructors

Constructor and Description
Ellipsoids()

Method Summary

Modifier and Type	Method and Description
int	getIndexFromName(String thisID)
String	getShapeState()
private void	getStateAtoms(javajs.util.SB sb)
private void	getStateID(javajs.util.SB sb)
private boolean	initEllipsoids(Object value)
boolean	isActive()
void	setModelClickability()
void	setProperty(String propertyName, Object value, BS bs) may come from any source -- executed AFTER a shape's own setProperty method
protected void	setSize(int size, BS bsSelected)
private void	setVis(Map<?,Ellipsoid> ellipsoids, BS bs, Atom[] atoms)
void	setVisibilityFlags(BS bs)

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getProperty, getPropertyData, getShapeDetail, getSize, getSizeG, getTranslucentLabel, getViewer, initializeShape, initModelSet, initShape, merge, setModelSet, setPropS, setShapeSizeRD, setSizeRD, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

simpleEllipsoids

public Map<String,Ellipsoid> simpleEllipsoids

atomEllipsoids

public Map<Tensor,Ellipsoid> atomEllipsoids

typeSelected

private String typeSelected

ellipsoidSelected

private Ellipsoid ellipsoidSelected

selectedAtoms

private BS selectedAtoms

Constructor Detail

Ellipsoids

public Ellipsoids()

Method Detail

isActive

public boolean isActive()

getIndexFromName

public int getIndexFromName(String thisID)

Overrides:

getIndexFromName in class Shape

Returns:

index

setSize

protected void setSize(int size,
                       BS bsSelected)

Overrides:

setSize in class Shape

setProperty

public void setProperty(String propertyName,
                        Object value,
                        BS bs)

Description copied from class: Shape

may come from any source -- executed AFTER a shape's own setProperty method

Specified by:

setProperty in class Shape

initEllipsoids

private boolean initEllipsoids(Object value)

getShapeState

public String getShapeState()

Specified by:

getShapeState in class Shape

getStateID

private void getStateID(javajs.util.SB sb)

getStateAtoms

private void getStateAtoms(javajs.util.SB sb)

setVisibilityFlags

public void setVisibilityFlags(BS bs)

Overrides:

setVisibilityFlags in class Shape

setVis

private void setVis(Map<?,Ellipsoid> ellipsoids,
                    BS bs,
                    Atom[] atoms)

setModelClickability

public void setModelClickability()

Overrides:

setModelClickability in class Shape