org.jmol.adapter.smarter

Class AtomIterator

java.lang.Object

org.jmol.adapter.smarter.AtomIterator

All Implemented Interfaces:

JmolAdapterAtomIterator

class AtomIterator
extends Object
implements JmolAdapterAtomIterator

Field Summary

Fields

Modifier and Type	Field and Description
private Atom	atom
private int	atomCount
private Atom[]	atoms
private BS	bsAtoms
private int	iatom

Constructor Summary

Constructors

Constructor and Description
AtomIterator(AtomSetCollection atomSetCollection)

Method Summary

Modifier and Type	Method and Description
char	getAlternateLocationID()
String	getAtomName()
int	getAtomSerial()
int	getAtomSetIndex()
int	getAtomSite()
BS	getAtomSymmetry()
float	getBfactor()
int	getChainID()
int	getElementNumber()
int	getFormalCharge()
String	getGroup3()
char	getInsertionCode()
boolean	getIsHetero()
int	getOccupancy()
float	getPartialCharge()
float	getRadius()
int	getSequenceNumber()
javajs.util.List<Object>	getTensors()
Object	getUniqueID()
javajs.util.V3	getVib()
javajs.util.P3	getXYZ()
boolean	hasNext()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

iatom

private int iatom

atom

private Atom atom

atomCount

private int atomCount

atoms

private Atom[] atoms

bsAtoms

private BS bsAtoms

Constructor Detail

AtomIterator

AtomIterator(AtomSetCollection atomSetCollection)

Method Detail

hasNext

public boolean hasNext()

Specified by:

hasNext in interface JmolAdapterAtomIterator

getAtomSetIndex

public int getAtomSetIndex()

Specified by:

getAtomSetIndex in interface JmolAdapterAtomIterator

getAtomSymmetry

public BS getAtomSymmetry()

Specified by:

getAtomSymmetry in interface JmolAdapterAtomIterator

getAtomSite

public int getAtomSite()

Specified by:

getAtomSite in interface JmolAdapterAtomIterator

getUniqueID

public Object getUniqueID()

Specified by:

getUniqueID in interface JmolAdapterAtomIterator

getElementNumber

public int getElementNumber()

Specified by:

getElementNumber in interface JmolAdapterAtomIterator

getAtomName

public String getAtomName()

Specified by:

getAtomName in interface JmolAdapterAtomIterator

getFormalCharge

public int getFormalCharge()

Specified by:

getFormalCharge in interface JmolAdapterAtomIterator

getPartialCharge

public float getPartialCharge()

Specified by:

getPartialCharge in interface JmolAdapterAtomIterator

getTensors

public javajs.util.List<Object> getTensors()

Specified by:

getTensors in interface JmolAdapterAtomIterator

getRadius

public float getRadius()

Specified by:

getRadius in interface JmolAdapterAtomIterator

getVib

public javajs.util.V3 getVib()

Specified by:

getVib in interface JmolAdapterAtomIterator

getBfactor

public float getBfactor()

Specified by:

getBfactor in interface JmolAdapterAtomIterator

getOccupancy

public int getOccupancy()

Specified by:

getOccupancy in interface JmolAdapterAtomIterator

getIsHetero

public boolean getIsHetero()

Specified by:

getIsHetero in interface JmolAdapterAtomIterator

getAtomSerial

public int getAtomSerial()

Specified by:

getAtomSerial in interface JmolAdapterAtomIterator

getChainID

public int getChainID()

Specified by:

getChainID in interface JmolAdapterAtomIterator

getAlternateLocationID

public char getAlternateLocationID()

Specified by:

getAlternateLocationID in interface JmolAdapterAtomIterator

getGroup3

public String getGroup3()

Specified by:

getGroup3 in interface JmolAdapterAtomIterator

getSequenceNumber

public int getSequenceNumber()

Specified by:

getSequenceNumber in interface JmolAdapterAtomIterator

getInsertionCode

public char getInsertionCode()

Specified by:

getInsertionCode in interface JmolAdapterAtomIterator

getXYZ

public javajs.util.P3 getXYZ()

Specified by:

getXYZ in interface JmolAdapterAtomIterator